Sex Hormone Testing: Timing, Methods and Interpretation

Level 3, Clinical application

In brief

Sex hormone results depend heavily on timing, method and context. In menstruating women, follicular phase tests assess ovarian function, a mid luteal progesterone confirms ovulation and AMH can be measured at any time. Female testosterone is best measured by mass spectrometry with SHBG. Men need repeated morning testosterone. Hormonal contraception, perimenopausal fluctuation and acute illness make results hard to interpret, and salivary and many urinary tests lack validation for clinical decisions.

Sex hormones are among the most frequently tested and most frequently misinterpreted laboratory measures. A progesterone taken on the wrong day, an oestradiol measured in a perimenopausal woman, a testosterone drawn in the afternoon or a result obtained while taking the contraceptive pill can all lead to wrong conclusions. The key to interpreting sex hormones is knowing when to test, how to test and when testing will not help.

Testing in menstruating women

Early follicular phase

Follicle stimulating hormone, luteinising hormone and oestradiol are usually measured on days 2 to 5 of the menstrual cycle, counting the first day of bleeding as day one. In this phase, hormone levels are low and relatively stable, allowing assessment of ovarian function. A raised FSH suggests reduced ovarian reserve; a high LH to FSH ratio has been associated with polycystic ovary syndrome but is not part of diagnostic criteria.

Mid luteal progesterone

Progesterone rises after ovulation. Measuring it about 7 days before the expected period, day 21 in a 28 day cycle, confirms whether ovulation has occurred. In longer or irregular cycles, the test should be timed relative to the next expected period, and repeated if needed. A single low value in an irregular cycle may simply reflect wrong timing.

Anti Müllerian hormone

AMH is produced by small ovarian follicles and reflects ovarian reserve. It can be measured at any point in the cycle. It is used in fertility assessment, and the 2023 international guideline allows raised AMH as an alternative to ultrasound for the polycystic ovarian morphology criterion in adults. AMH does not predict natural fertility in the short term in women without infertility, and should not be used as a fertility test for the general population.

Testosterone and androgens in women

Female testosterone levels are low, and many automated immunoassays are inaccurate at these concentrations. Liquid chromatography with tandem mass spectrometry is more accurate and is recommended where available. Measuring sex hormone binding globulin allows calculation of free testosterone or the free androgen index. Very high testosterone levels, or rapidly progressive virilisation, warrant urgent assessment for an androgen secreting tumour.

Prolactin

Prolactin can be raised by stress, recent breast stimulation, some medicines such as antipsychotics and some antidepressants, hypothyroidism and pituitary tumours. Mildly raised values may need repeating. Macroprolactin, a large inactive form, can cause raised results without clinical significance and can be checked by the laboratory.

When testing does not help

  • During hormonal contraception: combined oral contraceptives suppress the natural cycle, so FSH, LH, oestradiol and progesterone results do not reflect natural function. Contraceptives also raise SHBG, lowering free testosterone.
  • In perimenopause: hormone levels fluctuate widely, so a single FSH or oestradiol result can be misleading. Guidelines recommend diagnosing perimenopause and menopause clinically in women over 45 without blood tests.
  • During acute illness, which suppresses reproductive hormones.
  • During breastfeeding, when high prolactin and suppressed ovarian function are normal.

Testing in men

Testosterone should be measured in the morning, ideally fasting, and confirmed on a separate occasion before a diagnosis of deficiency is made. SHBG helps interpret total testosterone, especially in obesity, when SHBG is low. LH and FSH distinguish primary from secondary hypogonadism. Oestradiol in men requires a sensitive assay and is rarely needed routinely. Men using anabolic steroids or testosterone may have suppressed LH and FSH, and results after stopping reflect a recovery period.

Salivary and urinary testing

MethodUsesLimitations
SerumStandard for clinical diagnosisTiming and assay issues as above
SalivaResearch; late night salivary cortisol for Cushing screeningSex hormone levels in saliva are very low, influenced by collection methods and topical hormones, and correlate poorly with serum in many studies; not validated for guiding hormone therapy
Dried urine metabolite panelsResearch insight into hormone metabolismClinical significance of metabolite patterns not established; not validated for dosing hormone therapy

Salivary testing is sometimes used to guide dosing of compounded bioidentical hormones. National scientific reviews have concluded that this practice is not supported by evidence.

Monitoring hormone therapy

For women using menopausal hormone therapy, dosing is usually guided by symptom response rather than blood levels, although oestradiol levels may be checked in specific situations, such as poor absorption with transdermal preparations. For men on testosterone therapy, testosterone and haematocrit are monitored according to guidelines. Gender affirming hormone therapy is monitored according to specialist protocols.

Worked cases

The mistimed progesterone

A 32 year old woman trying to conceive has a day 21 progesterone that is low, and she is told she is not ovulating. Her cycles are 35 days long. When the test is repeated 7 days before her next expected period, day 28, her progesterone confirms ovulation.

The contraceptive confusion

A 26 year old woman on the combined pill has blood tests showing low FSH, LH and oestradiol and a low free testosterone. She has been told her hormones are imbalanced. These results are exactly what the pill produces and are not interpretable as natural hormone status.

The perimenopausal snapshot

A 47 year old woman with hot flushes and irregular periods has a normal FSH on one test and is told she is not perimenopausal. Given her age and symptoms, perimenopause is a clinical diagnosis, and a single FSH during fluctuation is uninformative. Her symptoms are managed accordingly.

The afternoon testosterone

A 45 year old man has a low testosterone on a test taken at 4 pm after lunch. A repeat morning fasting test is within the normal range.

The raised prolactin

A 30 year old woman with irregular periods has a mildly raised prolactin. She takes an antipsychotic. Her doctor considers the medicine as a cause, checks thyroid function and macroprolactin, and arranges further assessment only if indicated.

Right test, right time

Sex hormone testing is only as good as its timing, method and context. Knowing when to test, choosing reliable methods and recognising when a result cannot be interpreted protects patients from misdiagnosis and unnecessary treatment.

Hormone testing questions

When should progesterone be tested?
About 7 days before the expected period, which is day 21 only in a 28 day cycle.
Can hormones be tested on the pill?
Results do not reflect natural hormone status, because combined contraceptives suppress the natural cycle.
Are salivary hormone tests reliable?
Salivary sex hormone testing is not validated for guiding hormone therapy.

References and guidelines

  1. Teede HJ, Tay CT, Laven JJE, et al. Recommendations from the 2023 international evidence based guideline for the assessment and management of polycystic ovary syndrome. Journal of Clinical Endocrinology and Metabolism. 2023;108(10).
  2. Bhasin S, Brito JP, Cunningham GR, et al. Testosterone therapy in men with hypogonadism: an Endocrine Society clinical practice guideline. Journal of Clinical Endocrinology and Metabolism. 2018;103(5).
  3. Rosner W, Auchus RJ, Azziz R, et al. Utility, limitations, and pitfalls in measuring testosterone: an Endocrine Society position statement. Journal of Clinical Endocrinology and Metabolism. 2007;92(2).
  4. Steiner AZ, Pritchard D, Stanczyk FZ, et al. Association between biomarkers of ovarian reserve and infertility among older women of reproductive age. JAMA. 2017;318(14).
  5. National Institute for Health and Care Excellence. Menopause: identification and management (NG23). London: NICE; 2015, updated 2024.
  6. National Academies of Sciences, Engineering, and Medicine. The clinical utility of compounded bioidentical hormone therapy: a review of safety, effectiveness, and use. Washington, DC: The National Academies Press; 2020.

Continue your learning

Timing and interpreting hormone tests

Sex hormone assessment in both women and men is taught in the Hormones 2: Male and Female module of IIFM’s 6 month Functional Medicine and Clinical Nutrition program, including when testing is and is not useful.

This article is for the education of healthcare professionals. It is not a substitute for individual medical advice, diagnosis or treatment, and does not change any practitioner’s scope of practice. Regulation and guidelines differ between countries.