The Gut Brain Axis
Level 2, Intermediate
In brief
The gut brain axis is the 2 way communication between the digestive tract and the brain, carried by the vagus nerve, the enteric nervous system, stress hormones, immune signals and microbial metabolites. It explains why stress changes gut function, why gut symptoms and anxiety so often coexist, and why psychological therapies such as gut directed hypnotherapy help irritable bowel syndrome. Links between the microbiome and mood are an active research area, with promising but still preliminary human evidence.
Almost everyone has felt the gut respond to the mind: the knot of anxiety before an examination, the loss of appetite with grief, the urgent trip to the bathroom before a speech. The reverse is also familiar: the irritability of hunger, the low mood of prolonged digestive illness. These everyday experiences reflect a communication network so extensive that the gut is sometimes described as a second brain. Understanding that network explains a great deal about common digestive and mood disorders, and about why the most effective treatments often address both at once.
The pathways of communication
The vagus nerve
The vagus nerve connects the brainstem with the gut and most other organs. Most of its fibres carry information from the gut to the brain, not the other way round, relaying signals about stretch, nutrients, inflammation and microbial products. Its outgoing fibres influence gut motility, secretion and immune activity.
The enteric nervous system
Embedded in the wall of the digestive tract is a network of hundreds of millions of neurons, the enteric nervous system, capable of coordinating digestion independently of the brain. It uses many of the same neurotransmitters as the brain and communicates with it continuously.
Stress hormones
The hypothalamic pituitary adrenal axis and the sympathetic nervous system both act on the gut. Stress alters gut motility, increases visceral sensitivity, changes secretion and can increase intestinal permeability. Corticotropin releasing hormone acts directly on receptors in the gut as well as in the brain.
Immune signalling
The gut’s large immune system produces cytokines that can reach the brain and influence mood, sleep and behaviour. Inflammation is associated with symptoms of depression, fatigue and reduced motivation, a pattern sometimes called sickness behaviour.
Hormones and neurotransmitters from the gut
Specialised cells in the gut lining release hormones that affect appetite and satiety. The great majority of the body’s serotonin is produced in the gut, mainly by enterochromaffin cells, where it regulates motility and secretion. Gut serotonin does not cross into the brain directly, but it influences signalling through the vagus nerve and elsewhere.
Microbial metabolites
Gut microbes produce short chain fatty acids, metabolise tryptophan and bile acids, and generate compounds that can act on nerves, immune cells and possibly the brain. This is the newest and least understood pathway.
What the axis explains
Disorders of gut brain interaction
The Rome Foundation, which sets international criteria for functional gastrointestinal disorders, now describes them as disorders of gut brain interaction. Irritable bowel syndrome, functional dyspepsia and related conditions involve altered motility, heightened visceral sensitivity, changes in the microbiome and immune function, and altered central processing of gut signals. They are real disorders of how the gut and brain communicate, not imagined symptoms or purely psychological conditions.
Why stress worsens gut symptoms
Stress directly alters gut function through hormonal and neural pathways, and increases attention to and perception of gut sensations. People with irritable bowel syndrome frequently report that stress triggers flares.
Why anxiety and gut symptoms coexist
Anxiety and depression are common in people with disorders of gut brain interaction, and gut symptoms are common in people with anxiety and depression. Longitudinal studies suggest the relationship runs in both directions: in some people, anxiety precedes gut symptoms; in others, gut symptoms precede psychological distress.
Treatments that work through the axis
Several treatments act on the gut brain axis and have good evidence in irritable bowel syndrome.
| Treatment | How it may work | Evidence |
|---|---|---|
| Gut directed hypnotherapy | Alters perception and central processing of gut signals | Good evidence for symptom reduction, with durable benefit; delivered in person or through digital programmes |
| Cognitive behavioural therapy | Addresses thoughts and behaviours that amplify symptoms | Good evidence in irritable bowel syndrome |
| Low dose tricyclic antidepressants | Act as gut brain neuromodulators, reducing pain signalling | Effective for abdominal pain in irritable bowel syndrome, independent of mood effects; prescribed by a doctor |
| Dietary change | Reduces the peripheral stimuli that trigger symptoms | Good evidence for the low FODMAP approach and soluble fibre |
| Physical activity and sleep | Reduce stress and improve motility and mood | Supportive evidence |
The effectiveness of psychological therapies in a gut disorder is sometimes misread as evidence that the symptoms are “all in the mind”. The opposite is true. It demonstrates how closely the systems are connected, and that intervening in one can relieve the other.
The microbiome and the brain
Research linking the microbiome to mood and behaviour has grown rapidly. In animals, germ free mice show altered stress responses and behaviour, and transferring gut microbiota from depressed humans to rodents has induced depression like behaviours. In a large human cohort, certain butyrate producing bacteria were less abundant in people with depression, and some bacteria were found to have the genetic capacity to produce neuroactive compounds.
Human trials of probiotics for mood, sometimes called psychobiotics, have produced mixed results. Some small trials report modest benefits for depressive or anxiety symptoms, but studies vary in strains, doses and populations, and effects are generally small. It is reasonable to describe this as an exciting research area with preliminary evidence, not yet a basis for routine treatment.
Diet quality is a more practical point of intervention. A randomised trial of dietary improvement in people with major depression found greater improvement in symptoms with Mediterranean style dietary support than with social support, suggesting that nutrition may have a role alongside standard care, through the microbiome and other pathways.
Bringing the axis into practice
- Ask about both. In patients with gut symptoms, ask about stress, anxiety, mood and sleep. In patients with anxiety or depression, ask about digestion.
- Explain the connection. Many patients are relieved to understand that their symptoms are real and that gut and brain influence each other.
- Offer treatments that act on both. Gut directed hypnotherapy, cognitive behavioural approaches, physical activity and sleep improvement, alongside dietary change.
- Coordinate with mental health professionals where psychological symptoms are significant.
- Exclude organic disease before attributing symptoms to gut brain interaction, particularly with red flags.
- Be measured about microbiome interventions, presenting them as promising research rather than established treatment.
An illustrative case
A 26 year old law student has irritable bowel syndrome with diarrhoea that flares during examinations, alongside panic attacks and poor sleep. A low FODMAP diet has helped her bowel symptoms somewhat, but she now fears eating before any stressful event. Investigations for coeliac disease and inflammation are normal.
Her plan addresses both ends of the axis. She begins a digital gut directed hypnotherapy programme, is referred for cognitive behavioural therapy for panic, reintroduces foods she had removed with a dietitian’s support, and works on a regular sleep schedule and daily exercise. Over 3 months her flares become less frequent and less severe, her panic attacks reduce, and she eats more freely. No single intervention explained the improvement; addressing the connection did.
A system, not 2 systems
The gut brain axis dissolves the old boundary between physical and psychological symptoms. For practitioners, it offers both an explanation and a set of tools: an explanation of why gut and mood problems so often travel together, and tools that treat them together.
Questions about the gut brain axis
What is the gut brain axis?
Why does stress affect digestion?
Do psychological therapies help gut disorders?
References
- Drossman DA, Hasler WL. Rome IV: functional GI disorders: disorders of gut brain interaction. Gastroenterology. 2016;150(6).
- Mayer EA, Nance K, Chen S. The gut brain axis. Annual Review of Medicine. 2022;73.
- The neuroactive potential of the human gut microbiota in quality of life and depression (Flemish Gut Flora Project). Nature Microbiology. 2019;4(4).
- Jacka FN, O’Neil A, Opie R, et al. A randomised controlled trial of dietary improvement for adults with major depression (the SMILES trial). BMC Medicine. 2017;15(1).
- Black CJ, Thakur ER, Houghton LA, et al. Efficacy of psychological therapies for irritable bowel syndrome: systematic review and network meta analysis. Gut. 2020;69(8).
- Ford AC, Lacy BE, Harris LA, et al. Effect of antidepressants and psychological therapies in irritable bowel syndrome: an updated systematic review and meta analysis. American Journal of Gastroenterology. 2019;114(1).
Continue your learning
Working across gut and brain in practice
Stress and its effects on the gut are addressed in both the “Gut Dysfunction” and “Health Coaching and Stress Management” modules of IIFM’s 6 month Functional Medicine and Clinical Nutrition program, reflecting how closely the 2 systems work together.
This article is for the education of healthcare professionals. It is not a substitute for individual medical advice, diagnosis or treatment, and does not change any practitioner’s scope of practice. Regulation and guidelines differ between countries.

